gDRutils
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see gDRutils.
A package with helper functions for processing drug response data
Bioconductor version: 3.18
This package contains utility functions used throughout the gDR platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR platform. Many of the functions are utilized by the gDRcore package.
Author: Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Aleksander Chlebowski [aut], Marc Hafner [aut], Pawel Piatkowski [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Allison Vuong [aut]
Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>
citation("gDRutils")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gDRutils")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gDRutils")| gDRutils | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (0.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2) |
| Imports | BiocParallel, BumpyMatrix, checkmate, data.table, drc, jsonlite, jsonvalidate, magrittr, methods, MultiAssayExperiment, S4Vectors, stats, stringr, SummarizedExperiment |
| System Requirements | |
| URL |
See More
| Suggests | BiocManager, BiocStyle, futile.logger, gDRstyle(>= 0.99.15), gDRtestData(>= 0.99.12), IRanges, knitr, lintr, purrr, qs, rcmdcheck, rmarkdown, testthat, tools, yaml |
| Linking To | |
| Enhances | |
| Depends On Me | gDR |
| Imports Me | gDRcore, gDRimport |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gDRutils_1.0.0.tar.gz |
| Windows Binary | gDRutils_1.0.0.zip |
| macOS Binary (x86_64) | gDRutils_1.0.0.tgz |
| macOS Binary (arm64) | gDRutils_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gDRutils |
| Source Repository (Developer Access) | git clone [email protected]:packages/gDRutils |
| Bioc Package Browser | https://code.bioconductor.org/browse/gDRutils/ |
| Package Short Url | https://bioconductor.org/packages/gDRutils/ |
| Package Downloads Report | Download Stats |