gDRimport
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see gDRimport.
Package for handling the import of dose-response data
Bioconductor version: 3.18
The package is a part of the gDR suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.
Author: Arkadiusz Gladki [aut, cre], Bartosz Czech [aut], Marc Hafner [aut], Sergiu Mocanu [aut], Dariusz Scigocki [aut], Allison Vuong [aut], Luca Gerosa [aut], Janina Smola [aut]
Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>
citation("gDRimport")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gDRimport")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gDRimport")| Converting a gDR-generated MultiAssayExperiment object into a PharmacoSet | HTML | R Script |
| Converting PharmacoSet Drug Response Data into gDR object | HTML | R Script |
| gDRimport | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (0.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2) |
| Imports | assertthat, BumpyMatrix, checkmate, CoreGx, PharmacoGx, data.table, futile.logger, gDRutils(>= 0.99.5), magrittr, methods, MultiAssayExperiment, readxl, rio, S4Vectors, stats, stringi, SummarizedExperiment, tibble, tools, utils, XML, yaml, openxlsx |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, gDRtestData(>= 0.99.10), gDRstyle(>= 0.99.11), knitr, purrr, qs, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | gDR |
| Imports Me | |
| Suggests Me | gDRcore |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gDRimport_1.0.0.tar.gz |
| Windows Binary | gDRimport_1.0.0.zip (64-bit only) |
| macOS Binary (x86_64) | gDRimport_1.0.0.tgz |
| macOS Binary (arm64) | gDRimport_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gDRimport |
| Source Repository (Developer Access) | git clone [email protected]:packages/gDRimport |
| Bioc Package Browser | https://code.bioconductor.org/browse/gDRimport/ |
| Package Short Url | https://bioconductor.org/packages/gDRimport/ |
| Package Downloads Report | Download Stats |